vcu banner

Supplementary Material


High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction.
(2015) Submitted 
Joseph L. McClay, Andrey A. Shabalin, Mikhail G. Dozmorov, Daniel E. Adkins, Gaurav Kumar, Srilaxmi Nerella, Shaunna L. Clark, Sarah E. Bergen, Swedish Schizophrenia Consortium, Christina M. Hultman, Patrik K.E. Magnusson, Patrick F. Sullivan, Karolina A. Aberg, Edwin JCG van den Oord.

Interactive browser of all meQTLs by chromosome position is available at http://shabal.in/meQTL.html.

meQTL map image ‌ 
Horizontal axis - SNPs, vertical axis - methylation sites.
Double click or use mouse wheel to zoom in.
 
“Genome-wide meta-analysis of longitudinal alcohol consumption across youth and early adulthood.” 
(2015). Daniel E. Adkins, Shaunna L. Clark, William E. Copeland, Martin Kennedy, Kevin Conway, Adrian Angold, Hermine Maes, Youfang Liu, Gaurav Kumar, Alaattin Erkanli, Ashwin A. Patkar, Judy Silberg, Tyson H. Brown, David M. Fergusson, L. John Horwood, Lindon Eaves, Edwin J.C.G. van den Oord, Patrick F. Sullivan, E. J. Costello. Twin Research and Human Genetics. (in press). GWAS P-values can be downloaded at this location
 
Evaluation of methyl-binding domain based enrichment approaches revisited
Aberg et al. (2014) submitted
Coverage estimates of all investigated CpGs for the human samples can be downloaded at this location. Downlod the file called "human_CpG_coverage.tar.gz." The file is 3.7 GB and will take some time to download, make sure you have a stable connection and ample time before downloading. 
 
Updated July 2015