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Brad E. Windle , Ph.D.
Associate Professor
Department of Medicinal Chemistry


Location:
Massey Cancer Center, Room 319
Virginia Commonwealth University

Mailing Address:
School of Pharmacy - Dept of Medicinal Chemistry
BioTech One, Suite 205
800 E. Leigh St.
P.O. Box 980540
Richmond, VA 23298-0540

Phone: (804) 628-1956
Fax: 
Email: bwindle@vcu.edu
http://www.people.vcu.edu/~bwindle/


Research Interests

  • My laboratory is focused on developing new technologies for drug development using bioinformatics. Cells are defined by their genomics and proteomics, which govern their growth and response to the environment. Drugs are defined by their structure, interaction with cellular targets and cellular processes. Cells are remarkable sensors of both specific and non-specific perturbations caused by drugs. The advent of microarrays has made possible the global analysis of gene expression. We are using gene expression profile patterns to define how cells respond to drugs and the pathways involved. The patterns we identify represent fingerprints for each drug, which we use for functional categorization of drugs and the pathways with which the drugs interact. Our goal is to define how structure relates to pathway interactions.

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Publications

  • Recent Publications
    • Scian, M.J., Carchman, E.H., Mohanraj, L., Stagliano, K.E.R., Anderson, M.A.E., Deb, D., Crane, B.M., Kiyono, T., Windle, B., Deb, S.P. and Deb, S. Wild-type p53 and p73 negatively regulate expression of proliferation related genes. Oncogene, advance publication, 2007.
    • Ko, D., Xu, W., and Windle, B. Gene Function Classification Using NCI-60 Cell Line Gene Expression Profiles. Computational Biology and Chemistry 29:412-419, 2005.
    • Taylor, S., Smith, S., Windle, B., Guiseppi-Elie, A. Impact of Surface Chemistry and Blocking Strategies in DNA Microarrays. Nucleic Acids Research 31:1-19, 2003.
    • Windle, B and Guiseppi-Elie, A. Microarrays and Gene Expression Profiling Applied to Drug Research. (2003) In: Burger's Medicinal Chemistry and Drug Discovery, 6th edition (D. Abraham, ed.).
    • Ko D and Windle B. Enriching for correct prediction of biological processes using a combination of diverse classifiers. BMC Bioinformatics 12:189-201, 2011.

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Virginia Commonwealth University | School of Pharmacy
410 North 12th Street | Room 500
P.O. Box 980581
Richmond, Virginia 23298-0581
Phone: (804) 828-3000 | Toll-Free Line: (800) 330-0519 | Fax: (804) 827-0002
E-mail: pharmacy@vcu.edu
Updated: 10/18/2012

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